Angus T. Jones' Church -- We're NOT Affiliated with Doomsday Preacher

The church that baptized Angus T. Jones is making it clear ... it has ABSOLUTELY NO connection with the conspiracy theorist preacher who's taken Angus under his wing.

The Seventh-Day Adventist Church has released a statement about Jones ... saying it's "happy" Angus decided to become a member of the L.A. congregation back in June ... but the church wants everyone to know it was NOT behind the actor's anti-"Two and a Half Men" rant.

"These comments were of a personal nature, reflecting his views after having undergone changes during his spiritual journey," the church said.

As for Christopher Hudson -- the homophobic, anti-Obama, conspiracy theorist who interviewed Angus for his Forerunner Chronicles web series -- the church says:

"We are unable to offer information because Forerunner Chronicles is not a ministry operated by the Seventh-day Adventist Church and its host is not a pastor of the Seventh-day Adventist Church."

As we previously reported, Angus told Hudson "Men" was ungodly "filth" ... somehow connected to Satan ... and he no longer wants to be on the show.